Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

SRX1058003: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-169181' containing sample 'SKSTL0069'
1 ILLUMINA (Illumina MiSeq) run: 11,696 spots, 4.1M bases, 2.3Mb downloads

UUID: 1e962d0c-3468-4c5b-9517-bc18702b90b1

Design: Illumina sequencing of unclassified sequences via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: Microbiome study of the RISK cohort

PRJNA237362 • SRP040765 • All experiments • All runs

show Abstracthide Abstract

Risk Stratification and Identification of Immunogenetic and Microbial Markers of Rapid Disease Progression in Children with Crohn’s Disease.

Sample: Generic sample from unclassified sequences

SAMN03771662 • SRS960424 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: Solexa-169181

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 350770.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4IZGQ

material_type: DNA:DNA Genomic

product_order: PDO-1522

product_part_number: P-MCV-0002

project: G40326

research_project: RP-105

root_sample_id: SM-4475R

sample_id: SM-4IZGQ

work_request: 36905

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-10 15:49:19.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 11,696 spots, 4.1M bases, 2.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR2062020	11,696	4.1M	2.3Mb	2015-06-12

ID:: 1535012

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